USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

USC-OGP 2-DE database  Search by                Maps             Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal World-2DPAGE Repository Exclude local DBs has only effect if a remote interface is selected

Searching in 'USC-OGP 2-DE database' for entry matching: RS12_HUMAN USC-OGP 2-DE database:  RS12_HUMAN RS12_HUMAN General information about the entry View entry in simple text format Entry name RS12_HUMAN Primary accession number P25398 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=40S ribosomal protein S12; AltName: Full=Small ribosomal subunit protein eS12 {ECO:0000303|PubMed:24524803};. Gene name Name=RPS12 Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1341: pI=6.27; Mw=15226 SPOT OGP-1348: pI=6.78; Mw=14679 Cross-references UniProtKB/Swiss-Prot P25398; RS12_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name RS12_HUMAN Primary accession number P25398 Secondary accession number(s) Q76M58 Sequence was last modified on  March 3, 2009 (version 3) Annotations were last modified on  March 15, 2017 (version 162) Name and origin of the protein Description RecName: Full=40S ribosomal protein S12; AltName: Full=Small ribosomal subunit protein eS12 {ECO:0000303|PubMed:24524803}; Gene name Name=RPS12 Encoded on Name=RPS12 Keywords 3D-structure; Acetylation; Complete proteome; Cytoplasm; Direct protein sequencing; Reference proteome; Ribonucleoprotein; Ribosomal protein. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL X53505; CAA37582.1; -; mRNA EMBL AB061840; BAB79478.1; -; Genomic_DNA EMBL AK311826; BAG34768.1; -; mRNA EMBL AL137783; CAC12946.1; -; Genomic_DNA EMBL CH471051; EAW48011.1; -; Genomic_DNA EMBL BC017321; AAH17321.1; -; mRNA EMBL BC071930; AAH71930.1; -; mRNA EMBL BC095424; AAH95424.1; -; mRNA EMBL AB007153; BAA25819.1; -; Genomic_DNA CCDS CCDS5164.1; -; . PIR S22989; R3HU12; . RefSeq NP_001007.2; NM_001016.3; . UniGene Hs.546289; -; . PDB 4V6X; EM; 5.00 A; AM=1-132 PDB 5A2Q; EM; 3.90 A; M=1-132 PDB 5AJ0; EM; 3.50 A; BM=1-132 PDB 5FLX; EM; 3.90 A; M=1-132 PDB 5T2C; EM; 3.60 A; AM=1-132 PDBsum 4V6X; -; . PDBsum 5A2Q; -; . PDBsum 5AJ0; -; . PDBsum 5FLX; -; . PDBsum 5T2C; -; . ProteinModelPortal P25398; -; . BioGrid 112120; 121; . IntAct P25398; 24; . MINT MINT-1160578; -; . STRING 9606.ENSP00000230050; -; . iPTMnet P25398; -; . PhosphoSitePlus P25398; -; . SwissPalm P25398; -; . BioMuta RPS12; -; . DMDM 224471878; -; . UCD-2DPAGE P25398; -; . EPD P25398; -; . MaxQB P25398; -; . PaxDb P25398; -; . PeptideAtlas P25398; -; . PRIDE P25398; -; . TopDownProteomics P25398; -; . Ensembl ENST00000230050; ENSP00000230050; ENSG00000112306; . GeneID 6206; -; . KEGG hsa:6206; -; . UCSC uc003qdx.4; human; . CTD 6206; -; . DisGeNET 6206; -; . GeneCards RPS12; -; . HGNC HGNC:10385; RPS12; . HPA HPA006124; -; . HPA HPA006365; -; . MIM 603660; gene; . neXtProt NX_P25398; -; . OpenTargets ENSG00000112306; -; . PharmGKB PA34784; -; . eggNOG KOG3406; Eukaryota; . eggNOG COG1358; LUCA; . GeneTree ENSGT00390000018318; -; . HOGENOM HOG000210688; -; . HOVERGEN HBG001720; -; . InParanoid P25398; -; . KO K02951; -; . OMA NCDEPTY; -; . OrthoDB EOG091G0UB5; -; . PhylomeDB P25398; -; . TreeFam TF300196; -; . Reactome R-HSA-156827; L13a-mediated translational silencing of Ceruloplasmin expression; . Reactome R-HSA-156902; Peptide chain elongation; . Reactome R-HSA-1799339; SRP-dependent cotranslational protein targeting to membrane; . Reactome R-HSA-192823; Viral mRNA Translation; . Reactome R-HSA-2408557; Selenocysteine synthesis; . Reactome R-HSA-6791226; Major pathway of rRNA processing in the nucleolus and cytosol; . Reactome R-HSA-72649; Translation initiation complex formation; . Reactome R-HSA-72689; Formation of a pool of free 40S subunits; . Reactome R-HSA-72695; Formation of the ternary complex; and subsequently; the 43S complex Reactome R-HSA-72702; Ribosomal scanning and start codon recognition; . Reactome R-HSA-72706; GTP hydrolysis and joining of the 60S ribosomal subunit; . Reactome R-HSA-72764; Eukaryotic Translation Termination; . Reactome R-HSA-975956; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC); . Reactome R-HSA-975957; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC); . ChiTaRS RPS12; human; . GeneWiki RPS12; -; . GenomeRNAi 6206; -; . PRO PR:P25398; -; . Proteomes UP000005640; Chromosome 6; . Bgee ENSG00000112306; -; . CleanEx HS_RPS12; -; . Genevisible P25398; HS; . GO GO:0005829; C:cytosol; IDA:HPA; . GO GO:0022627; C:cytosolic small ribosomal subunit; IDA:UniProtKB; . GO GO:0016020; C:membrane; IDA:UniProtKB; . GO GO:0005654; C:nucleoplasm; TAS:Reactome; . GO GO:0003723; F:RNA binding; IDA:UniProtKB; . GO GO:0003735; F:structural constituent of ribosome; IBA:GO_Central; . GO GO:0000184; P:nuclear-transcribed mRNA catabolic process; nonsense-mediated decay; TAS:Reactome GO GO:0006364; P:rRNA processing; TAS:Reactome; . GO GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; TAS:Reactome; . GO GO:0006412; P:translation; NAS:UniProtKB; . GO GO:0006413; P:translational initiation; TAS:Reactome; . GO GO:0019083; P:viral transcription; TAS:Reactome; . Gene3D 3.30.1330.30; -; 1; . InterPro IPR029064; L30e-like; . InterPro IPR004038; Ribosomal_L7Ae/L30e/S12e/Gad45; . InterPro IPR000530; Ribosomal_S12e; . PANTHER PTHR11843; PTHR11843; 1; . Pfam PF01248; Ribosomal_L7Ae; 1; . PRINTS PR00972; RIBSOMALS12E; . SUPFAM SSF55315; SSF55315; 1; . PROSITE PS01189; RIBOSOMAL_S12E; 1; .

Gateways to other related servers

• The World-2DPAGE Constellation - Entry point to the world-wide 2-DPAGE resources.
• World-2DPAGE Repository - A public repository for gel-based proteomics data linked to protein identification published in the literature.
• World-2DPAGE Portal - A dynamic portal to query simultaneously world-wide gel-based proteomics databases.
• SWISS-2DPAGE - The Geneva Two-dimensional polyacrylamide gel electrophoresis database.
• ExPASy - The resources web server of the Swiss Institute of Bioinformatics

[Home]